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Table 1 VKORC1 haplotypes in different world populations

From: Cross-ethnic analysis of common gene variants in hemostasis show lopsided representation of global populations in genetic databases

Gene

VKORC1

Haplotype frequencies

Cromosome

16

16

16

16

16

16

16

16

This study

1000 genomes phase III

Position hg19

31,102,321

31,103,796

31,104,509

31,104,720

31,104,878

31,105,353

31,105,554

31,105,945

Ref. allele

C

A

C

C

G

G

A

C

Alt. Allelle

T

G

G

T

A

A

C

A

rs-number

rs7294

rs2359612

rs8050894

rs72547529

rs9934438

rs17708472

rs2884737

rs61742245

SOM

ASW

CEU

CHB

GIH

JPT

LWK

MXL

TSI

YRI

Haplotypes

C

A

C

C

G

G

A

C

 

7%

    

12%

  

14%

C

A

C

T

G

G

A

C

      

3%

   

C

A

G

C

A

G

A

C

3%

8%

17%

95%

11%

90%

3%

33%

15%

3%

C

A

G

C

A

G

C

C

41%

7%

28%

 

7%

  

14%

33%

 

C

G

C

C

G

A

A

C

14%

7%

26%

 

16%

 

6%

15%

16%

2%

C

G

C

C

G

G

A

A

8%

         

C

G

C

C

G

G

A

C

1%

8%

    

19%

  

10%

C

G

G

C

G

G

A

C

 

15%

    

13%

3%

2%

19%

T

G

C

C

G

G

A

C

31%

48%

32%

4%

67%

10%

43%

34%

33%

51%

  1. The following populations were included: Somali in Northeastern Somalia (SOM), African Ancestry in Southwest USA (ASW), Northern Europeans from Utah (CEU), Han Chinese in Beijing, China (CHB), Gujarati Indians in Houston, Texas, USA (GIH), Japanese in Tokyo, Japan (JPT), Luhya in Webuye, Kenya (LWK), Mexican Ancestry in Los Angeles, CA, USA (MXL), Toscani in Italy (TSI), and Yoruba in Ibadan, Nigeria (YRI)
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BMC Medical Genomics

ISSN: 1755-8794

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