From: Vitamin D receptor gene polymorphism and polycystic ovary syndrome susceptibility
SNP (AJ/AI) | Genotypes M/H/N | MAF | HW | GMAF | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Fertile (207) | PCOS (185) | PCOS phenotypes | Total (392) | 1ry infertility | 2nd infertility | |||||||
A (88) | C (41) | D (56) | q 2 | P | ||||||||
rs11568820 (C/T) | 154/45/8 (0.15) | 63/71/51 (0.47) | 31/30/27 (0.48) | 14/16/11 (0.46) | 18/25/13 (0.45) | 217/116/59 | 31/41/26 | 32/30/25 | 0.30 | 3.76 | 0.052 | 0.46 |
rs4516035 (C/T) | 149/49/9 (0.16) | 120/27/38 (0.28) | 54/16/18 (0.30) | 26/7/8 (0.28) | 40/4/12 (0.25) | 269/76/47 | 60/20/18 | 60/7/20 | 0.22 | 3.36 | 0.066 | 0.18 |
rs2228570 (FokI) (C/T) | 146/54/7 (0.16) | 110/48/27 (0.28) | 56/22/10 (0.24) | 21/12/8 (0.30) | 33/14/9 (0.29) | 256/102/34 | 56/29/13 | 51/22/14 | 0.22 | 0.52 | 0.473 | 0.33 |
rs3782905 (C/G) | 154/48/5 (0.14) | 104/55/26 (0.29) | 53/26/9 (0.25) | 22/11/8 (0.33) | 29/18/9 (0.32) | 258/103/31 | 53/33/12 | 51/22/14 | 0.21 | 0.29 | 0.532 | 0.24 |
rs2107301 (C/T) | 165/37/5 (0.11) | 108/58/19 (0.26) | 48/29/11 (0.29) | 24/15/2 (0.23) | 36/14/6 (0.23) | 273/95/24 | 60/29/9 | 48/29/10 | 0.18 | 2.59 | 0.107 | 0.34 |
rs1544410 (BsmI) (G/A) | 153/47/7 (0.15) | 104/51/30 (0.30) | 46/28/14 (0.32) | 25/9/7 (0.28) | 33/14/9 (0.29) | 257/98/37 | 51/28/19 | 53/23/11 | 0.22 | 1.92 | 0.165 | 0.30 |
rs7975232 (ApaI) (A/C) | 133/60/14 (0.21) | 99/54/32 (0.32) | 52/23/13 (0.28) | 18/14/9 (0.39) | 29/17/10 (0.33) | 232/114/46 | 49/30/19 | 50/24/13 | 0.26 | 3.72 | 0.052 | 0.45 |
rs731236 (TaqI) (T/C) | 164/38/5 (0.12) | 102/48/35 (0.32) | 44/28/16 (0.34) | 23/9/9 (0.33) | 35/11/10 (0.28) | 266/86/40 | 53/25/20 | 49/23/15 | 0.21 | 2.26 | 0.133 | 0.28 |
rs739837 (T/G) | 159/42/6 (0.13) | 107/51/27 (0.28) | 50/24/14 (0.30) | 21/12/8 (0.34) | 36/15/5 (0.22) | 266/93/33 | 59/25/14 | 52/22/13 | 0.20 | 2.31 | 0.129 | 0.49 |