Gut microbiome | SNPs | OR (95% CI) | P-value |
---|---|---|---|
AIH | |||
 Class_Clostridia | 12 | 0.58 (0.35 to 0.97) | 0.039 |
 Family_Victivallaceae | 12 | 1.42 (1.11 to 1.81) | 0.005 |
 Genus_Anaerostipes | 13 | 0.35 (0.17 to 0.74) | 0.006 |
 Genus_Clostridium innocuum group | 9 | 0.67 (0.49 to 0.93) | 0.017 |
 Genus_Holdemania | 15 | 0.66 (0.46 to 0.95) | 0.025 |
 Genus_Ruminiclostridium9 | 9 | 0.39 (0.20 to 0.76) | 0.006 |
 Genus_Ruminococcaceae NK4A214 group | 13 | 1.64 (1.03 to 2.64) | 0.039 |
PBC | |||
 Class_Coriobacteriia | 3 | 2.18 (1.30 to 3.66) | 0.003 |
 Class_Deltaproteobacteria | 4 | 0.52 (0.36 to 0.74) |  < 0.001 |
 Order_Coriobacteriales | 3 | 2.18 (1.30 to 3.66) | 0.003 |
 Family_Coriobacteriaceae | 3 | 2.18 (1.30 to 3.66) | 0.003 |
 Family_Desulfovibrionaceae | 3 | 0.53 (0.34 to 0.81) | 0.003 |
 Genus_Ruminiclostridium5 | 4 | 1.47 (1.03 to 2.09) | 0.032 |
PSC | |||
 Phylum_Tenericutes | 5 | 1.66 (1.06 to 2.61) | 0.027 |
 Class_Mollicutes | 5 | 1.66 (1.06 to 2.61) | 0.027 |
 Order_Actinomycetales | 3 | 0.59 (0.36 to 0.98) | 0.042 |
 Family_Actinomycetaceae | 3 | 0.60 (0.36 to 0.98) | 0.042 |
 Family_Clostridiales vadin BB60 group | 10 | 0.73 (0.54 to 0.98) | 0.035 |
 Family_Oxalobacteraceae | 5 | 1.44 (1.08 to 1.91) | 0.014 |
 Genus_Actinomyces | 4 | 0.62 (0.42 to 0.90) | 0.012 |
 Genus_Alloprevotella | 3 | 0.68 (0.50 to 0.94) | 0.018 |