Table 3 Pre-processing of simulated bulk RNA-seq data as the input for CIBERSORTx and quanTIseq
From: HArmonized single-cell RNA-seq Cell type Assisted Deconvolution (HASCAD)
| Â | CIBERSORTx | quanTIseq |
|---|---|---|
No H–S correction | TPM | TPM |
H–S correction | TPM corrected by the H–S approach, and then transformed again back to TPM-like values | |