Table 4 Mapping the ground-truth cell types in GSE141498 to the immune cell types predicted by different CCD methods
From: HArmonized single-cell RNA-seq Cell type Assisted Deconvolution (HASCAD)
| Â | HASCAD | CIBERSORTx | quanTIseq |
|---|---|---|---|
B cells | bnaive bmem | B.cells.naive B.cells.memory | B.cells |
CD4 T cells | cd4mem cd4naive treg | T.cells.CD4.naive T.cells.CD4.memory.resting T.cells.CD4.memory.activated T.cells.regulatory..Tregs | T.cells.CD4 Tregs |
Dendritic cells | pdc adc | Dendritic.cells.resting Dendritic.cells.activated | Dendritic.cells |
Monocytes | mono14 mono16 | monocytes | Monocytes |