Table 6 Cell-type mapping of CIBERSORTx, quanTIseq, and HASCAD to the cell types investigated in GSE107572
From: HArmonized single-cell RNA-seq Cell type Assisted Deconvolution (HASCAD)
GSE107572 | CIBERSORTx | HASCAD | quanTIseq |
|---|---|---|---|
NK | NK cells resting NK cells activated | NK | NK.cell |
B cell | B.vaive | bnaive, bmem | B.cells |
DC | Dendritic cells resting Dendritic cells activated | pdc, adc | Dendritic.cells |
monocyte | monocyte | mono14, mono16 | Monocytes |
CD8 | T.cells.CD8 | dd8naive, cd8eff, cd8mem | T.cells.CD8 |
CD4 | T.cells.CD4.naïve | c4naive, cd4mem | T.cells.CD4 |
Treg | T.cells.regulatory..Tregs | treg | Tregs |
neutrophils | X | X | X |
X | X | hsc, mk | X |