From: ASEQ: fast allele-specific studies from next-generation sequencing data
Input SNP list | DNA mean coverage | RNA mean coverage | Het SNPs | Available genes | ASE genes | Available imprinted genes | Imprinted ASE genes |
---|---|---|---|---|---|---|---|
1,000 Genomes Project | 88 | 39 | 16016 | 3071 | 184 (6%) | 10 | 1 |
Coding dbsnp 138 | 100 | 41 | 7465 | 2403 | 169 (7%) | 9 | 2 |
Exon dbsnp138 | 90 | 40 | 9372 | 2840 | 203 (7.1%) | 13 | 4 |