Table 1 A list of Affymetrix datasets used in the study
Dataset identifier | Initial number of samples (Tumor + Normal) | Samples (Tumor + Normal) left after initial preprocessing | Affymetrix platform | Reference |
|---|---|---|---|---|
GSE31056 | 47 (23 + 24) | 47 (23 + 24) | HGU-133plus2 | [137] |
GSE9844 | 38 (26 + 12) | 38 (26 + 12) | HGU-133plus2 | [5] |
GSE30784 | 212 (167 + 45) | 210 (165 + 45) | HGU-133plus2 | [138] |
GSE3524 | 20 (16 + 4) | 20 (16 + 4) | HGU-133a | [139] |
GSE42743 | 103 (74 + 29) | 100 (73 + 27) | HGU-133plus2 | [96] |
GSE2280 | 27 (22 + 5) | 27 (22 + 5) | HGU-133a | [140] |
GSE6791 | 44 (30 + 14) | 44 (30 + 14) | HGU-133plus2 | [141] |