Table 3 MicroRNA (miRNA) enrichment analysis of 161 human CL/P genes (FDR < 0.1)

miR-154

hsa-miR-369-3p

CHD7, DMD, EYA1, GABRB3, GREM1, HOXB3, NOG, PAX6, TIMP2, TULP4, BAG4, FZD6, YOD1

miR-154

hsa-miR-655-3p

BCL2, DMD, EN2, GREM1, HOXB3, MAFB, MID1, NTN1, PAX6, SATB2, TULP4, CYP1A1, FZD6, YOD1

miR-374

hsa-miR-374a-5p

CHD7, DMD, EYA1, FGFR2, FOXG1, HECTD1, HOXB3, JARID2, MSX1, NOG, NTN1, PAX6, RAD51, RHPN2, RUNX2, TGFA, TNS1, WNT5A, WNT5B, YOD1, EN2, FZD6

miR-374

hsa-miR-374b-5p

CHD7, DMD, EYA1, FGFR2, FOXG1, HECTD1, HOXB3, JARID2, MSX1, NOG, NTN1, PAX6, RAD51, RHPN2, RUNX2, TGFA, TNS1, WNT5A, WNT5B, YOD1, EN2, FZD6

miR-497

hsa-miR-497-5p

AXIN2, BAG4, BCL2, CHD7, CRISPLD2, EN2, EYA1, FGF1, FGF2, FGFR1, FGFR2, FOXP2, FZD6, HECTD1, JARID2, PAX7, RHPN2, SATB2, SLC6A4, WNT3A, YOD1, MTHFR, RUNX2, TFAP2A, TPM1

miR-124

hsa-miR-124-3p

GABRB3, GCH1, JAG2, KIF2A, MTR, MYH9, ROR2, RYK, TANC2, ARHGAP29, COL4A4, DVL2, EFNB1, FGF1, FGFR1, FOXF2, GREM1, HOXB3, KIF7, PDGFC, PEMT, PKP1, RAD51, RUNX2, SOX9, TBX22, TP63, TPM1, WNT5B

miR-1271

hsa-miR-1271-3p

CBS, DCAF7, FZD6, RAD51, YOD1

miR-203

hsa-miR-203a-3p

E2F1, EN2, GREM1, HECTD1, KIF2A, PAX6, RUNX2, SMAD2, TP63

miR-27

hsa-miR-27b-3p

BCL3, CHD7, COL21A1, DVL2, EN2, EYA1, FGF1, FOXP2, GABRB3, GCH1, GREM1, HOXB3, PAX9, RARA, SATB2, SMAD1, STK32B, SMAD2, DCAF7, PAX3, PAX7, SEC16A, WNT9B

miR-154

hsa-miR-300

CR1, DVL2, FGF1, FGFR2, FOXF2, FOXP2, GABRB3, GAD1, HECTD1, JAG2, MID1, PDGFC, TANC2, TGFB3, WNT5A, CRISPLD2, GREM1, PHF8

NA

hsa-miR-3678-3p

E2F1, GABRB3, JARID2, SLC6A4, YOD1

miR-368

hsa-miR-376b-3p

CRISPLD2, EN2, FGFR1, MYH9, PAX3, PAX6, PRSS35, TANC2, FGF2, FOXG1

miR-154

hsa-miR-381-3p

CR1, DVL2, FGF1, FGFR2, FOXF2, FOXP2, GABRB3, GAD1, HECTD1, JAG2, MID1, PDGFC, TANC2, TGFB3, WNT5A, CRISPLD2, GREM1, PHF8

miR-503

hsa-miR-503-5p

HECTD1, JARID2, MAFB, WNT3A, BCL2, DHFR, FGF2, FGFR1, SMAD2, TFAP2A

miR-550

hsa-miR-550a-3-5p

CBS, DCAF7, FZD6, RAD51, YOD1

miR-550

hsa-miR-550a-5p

CBS, DCAF7, FZD6, RAD51, YOD1