Boelens MC, te Meerman GJ, Gibcus JH, Blokzijl T, Boezen HM, Timens W, Postma DS, Groen HJ, van den Berg A: Microarray amplification bias: loss of 30% differentially expressed genes due to long probe - poly(A)-tail distances. BMC Genomics. 2007, 8: 277-10.1186/1471-2164-8-277.
Article
PubMed
PubMed Central
Google Scholar
de Bruin EC, van de Pas S, Lips EH, van Eijk R, van der Zee MM, Lombaerts M, van Wezel T, Marijnen CA, van Krieken JH, Medema JP, van de Velde CJ, Eilers PH, Peltenburg LT: Macrodissection versus microdissection of rectal carcinoma: minor influence of stroma cells to tumor cell gene expression profiles. BMC Genomics. 2005, 6: 142-10.1186/1471-2164-6-142.
Article
PubMed
PubMed Central
Google Scholar
Klee EW, Erdogan S, Tillmans L, Kosari F, Sun Z, Wigle DA, Yang P, Aubry MC, Vasmatzis G: Impact of sample acquisition and linear amplification on gene expression profiling of lung adenocarcinoma: laser capture micro-dissection cell-sampling versus bulk tissue-sampling. BMC Med Genomics. 2009, 2: 13-10.1186/1755-8794-2-13.
Article
PubMed
PubMed Central
Google Scholar
Henson DE, Dittus C, Younes M, Nguyen H, Albores-Saavedra J: Differential Trends in the Intestinal and Diffuse Types of Gastric Carcinoma in the United States, 1973-2000: Increase in the Signet Ring Cell Type. Arch Pathol Lab Med. 2004, 128: 765-770.
PubMed
Google Scholar
Wu MS, Lin YS, Chang YT, Shun CT, Lin MT, Lin JT: Gene expression profiling of gastric cancer by microarray combined with laser capture microdissection. World J Gastroenterol. 2005, 11: 7405-7412.
CAS
PubMed
PubMed Central
Google Scholar
Jinawath N, Furukawa Y, Hasegawa S, Li M, Tsunoda T, Satoh S, Yamaguchi T, Imamura H, Inoue M, Shiozaki H, Nakamura Y: Comparison of gene-expression profiles between diffuse- and intestinal-type gastric cancers using a genome-wide cDNA microarray. Oncogene. 2004, 23 (40): 6830-6844. 10.1038/sj.onc.1207886.
Article
CAS
PubMed
Google Scholar
Tsukamoto Y, Uchida T, Karnan S, Noguchi T, Nguyen LT, Tanigawa M, Takeuchi I, Matsuura K, Hijiya N, Nakada C, Kishida T, Kawahara K, Ito H, Murakami K, Fujioka T, Seto M, Moriyama M: Genome-wide analysis of DNA copy number alterations and gene expression in gastric cancer. J Pathol. 2008, 216 (4): 471-482. 10.1002/path.2424.
Article
CAS
PubMed
Google Scholar
Kim HK, Choi IJ, Kim CG, Kim HS, Oshima A, Yamada Y, Aaro Y, Nishio K, Michalowski A, Green JE: Three-gene predictor of clinical outcome for gastric cancer patients treated with chemotherapy. Pharmacogenomics J. 2010.
Google Scholar
Kim HK, Choi IJ, Kim CG, Kim HS, Oshima A, Michalowski A, Green JE: A Gene Expression Signature of Acquired Chemoresistance to Cisplatin and Fluorouracil Combination Chemotherapy in Gastric Cancer Patients. PLoS ONE. 2011, 6 (2): e16694-10.1371/journal.pone.0016694.
Article
CAS
PubMed
PubMed Central
Google Scholar
Kim HK, Choi IJ, Kim HS, Kim JH, Kim E, Park IS, Chun JH, Kim IH, Kim IJ, Kang HC, Park JH, Bae JM, Lee JS, Park JG: DNA microarray analysis of the correlation between gene expression patterns and acquired resistance to 5-FU/cisplatin in gastric cancer. Biochem Biophys Res Commun. 2004, 316 (3): 781-789. 10.1016/j.bbrc.2004.02.109.
Article
CAS
PubMed
Google Scholar
Simon R, Lam A, Li MC, Ngan M, Menenzes S, Zhao Y: Analysis of gene expression data using BRB-Array Tools. Cancer Inform. 2007, 2: 11-17.
Google Scholar
Xu X, Zhao Y, Simon R: Gene sets expression comparison kit for BRB-ArrayTools. Bioinformatics. 2008, 24: 137-139. 10.1093/bioinformatics/btm541.
Article
CAS
PubMed
Google Scholar
Leung WK, Yu J, Chan FK, To KF, Chan MW, Ebert MP, Ng EK, Chung SC, Malfertheiner P, Sung JJ: Expression of trefoil peptides (TFF1, TFF2, and TFF3) in gastric carcinomas, intestinal metaplasia, and non-neoplastic gastric tissues. J Pathol. 2002, 197 (5): 582-588. 10.1002/path.1147.
Article
CAS
PubMed
Google Scholar
Shi SQ, Cai JT, Yang JM: Expression of trefoil factors 1 and 2 in precancerous condition and gastric cancer. World J Gastroenterol. 2006, 12 (19): 3119-3122.
Article
CAS
PubMed
PubMed Central
Google Scholar
Kosriwong K, Menheniott TR, Giraud AS, Jearanaikoon P, Sripa B, Limpaiboon T: Trefoil factors: Tumor progression markers and mitogens via EGFR/MAPK activation in cholangiocarcinoma. World J Gastroenterol. 2011, 17 (12): 1631-1641. 10.3748/wjg.v17.i12.1631.
Article
CAS
PubMed
PubMed Central
Google Scholar
Tay ST, Leong SH, Yu K, Aggarwal A, Tan SY, Lee CH, Wong K, Visvanathan J, Lim D, Wong WK, Soo KC, Kon OL, Tan P: A combined comparative genomic hybridization and expression microarray analysis of gastric cancer reveals novel molecular subtypes. Cancer Res. 2003, 63 (12): 3309-3316.
CAS
PubMed
Google Scholar
Furuya T, Uchiyama T, Adachi A, Chochi Y, Oga A, Kawauchi S, Ishiglo K, Sasaki K: Relation of DNA ploidy to genetic aberrations detected by chromosomal CGH and FISH in gastric adenocarcinomas. Oncol Rep. 2006, 15 (6): 1491-1496.
CAS
PubMed
Google Scholar
Pinard R, de Winter A, Sarkis GJ, Gerstein MB, Tartaro KR, Plant RN, Egholm M, Rothberg JM, Leamon JH: Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing. BMC Genomics. 2006, 7: 216-10.1186/1471-2164-7-216.
Article
PubMed
PubMed Central
Google Scholar
Sakakura C, Mori T, Sakabe T, Ariyama Y, Shinomiya T, Date K, Hagiwara A, Yamaguchi T, Takahashi T, Nakamura Y, Abe T, Inazawa J: Gains, losses, and amplifications of genomic materials in primary gastric cancers analyzed by comparative genomic hybridization. Genes Chromosomes Cancer. 1999, 24: 299-305. 10.1002/(SICI)1098-2264(199904)24:4<299::AID-GCC2>3.0.CO;2-U.
Article
CAS
PubMed
Google Scholar
Guan XY, Fu SB, Xia JC, Fang Y, Sham JS, Du BD, Zhou H, Lu S, Wang BQ, Lin YZ, Liang Q, Li XM, Du B, Ning XM, Du JR, Li P, Trent JM: Recurrent chromosome changes in 62 primary gastric carcinomas detected by comparative genomic hybridization. Cancer Genet Cytogenet. 2000, 123 (1): 27-34. 10.1016/S0165-4608(00)00306-X.
Article
CAS
PubMed
Google Scholar
Wu MS, Chang MC, Huang SP, Tseng CC, Sheu JC, Lin YW, Shun CT, Lin MT, Lin JT: Correlation of histologic subtypes and replication error phenotype with comparative genomic hybridization in gastric cancer. Genes Chromosomes Cancer. 2001, 30 (1): 80-86. 10.1002/1098-2264(2000)9999:9999<::AID-GCC1062>3.0.CO;2-R.
Article
CAS
PubMed
Google Scholar
Takada H, Imoto I, Tsuda H, Sonoda I, Ichikura T, Mochizuki H, Okanoue T, Inazawa J: Screening of DNA copy-number aberrations in gastric cancer cell lines by array-based comparative genomic hybridization. Cancer Sci. 2005, 96 (2): 100-110. 10.1111/j.1349-7006.2005.00016.x.
Article
CAS
PubMed
Google Scholar
Nakamura Y, Migita T, Hosoda F, Okada N, Gotoh M, Arai Y, Fukushima M, Ohki M, Miyata S, Takeuchi K, Imoto I, Katai H, Yamaguchi T, Inazawa J, Hirohashi S, Ishikawa Y, Shibata T: Krüppel-like factor 12 plays a significant role in poorly differentiated gastric cancer progression. Int J Cancer. 2009, 125 (8): 1859-1867. 10.1002/ijc.24538.
Article
CAS
PubMed
Google Scholar
Finak G, Bertos N, Pepin F, Sadekova S, Souleimanova M, Zhao H, Chen H, Omeroglu G, Meterissian S, Omeroglu A, Hallett M, Park M: Stromal gene expression predicts clinical outcome in breast cancer. Nat Med. 2008, 14 (5): 518-527. 10.1038/nm1764.
Article
CAS
PubMed
Google Scholar
Witkiewicz AK, Dasgupta A, Sotgia F, Mercier I, Pestell RG, Sabel M, Kleer CG, Brody JR, Lisanti MP: An absence of stromal caveolin-1 expression predicts early tumor recurrence and poor clinical outcome in human breast cancers. Am J Pathol. 2009, 174 (6): 2023-2034. 10.2353/ajpath.2009.080873.
Article
CAS
PubMed
PubMed Central
Google Scholar
Tomlins SA, Mehra R, Rhodes DR, Cao X, Wang L, Dhanasekaran SM, Kalyana-Sundaram S, Wei JT, Rubin MA, Pienta KJ, Shah RB, Chinnaiyan AM: Integrative molecular concept modeling of prostate cancer progression. Nat Genet. 2007, 39 (1): 41-51. 10.1038/ng1935.
Article
CAS
PubMed
Google Scholar
Dallas PB, Gottardo NG, Firth MJ, Beesley AH, Hoffmann K, Terry PA, Freitas JR, Boag JM, Cummings AJ, Kees UR: Gene expression levels assessed by oligonucleotide microarray analysis and quantitative real-time RT-PCR -- how well do they correlate?. BMC Genomics. 2005, 6: 59-10.1186/1471-2164-6-59.
Article
PubMed
PubMed Central
Google Scholar
Arikawa E, Sun Y, Wang J, Zhou Q, Ning B, Dial SL, Guo L, Yang J: Cross-platform comparison of SYBR Green real-time PCR with TaqMan PCR, microarrays and other gene expression measurement technologies evaluated in the MicroArray Quality Control (MAQC) study. BMC Genomics. 2008, 9: 328-10.1186/1471-2164-9-328.
Article
PubMed
PubMed Central
Google Scholar
Bosotti R, Locatelli G, Healy S, Scacheri E, Sartori L, Mercurio C, Calogero R, Isacchi A: Cross platform microarray analysis for robust identification of differentially expressed genes. BMC Bioinformatics. 2007, 8 (Suppl 1): S5-10.1186/1471-2105-8-S1-S5.
Article
PubMed
PubMed Central
Google Scholar