Wroblewski LE, Peek RM, Wilson KT: Helicobacter pylori and gastric cancer: factors that modulate disease risk. Clin Microbiol Rev. 2010, 23 (4): 713-739. 10.1128/CMR.00011-10.
Article
CAS
PubMed
PubMed Central
Google Scholar
Peek RM, Fiske C, Wilson KT: Role of innate immunity in Helicobacter pylori-induced gastric malignancy. Physiol Rev. 2010, 90 (3): 831-858. 10.1152/physrev.00039.2009.
Article
CAS
PubMed
PubMed Central
Google Scholar
Ferlay J, Shin HR, Bray F, Forman D, Mathers C, Parkin DM: Estimates of worldwide burden of cancer in 2008: GLOBOCAN 2008. Int J Cancer. 2010, 127 (12): 2893-2917. 10.1002/ijc.25516.
Article
CAS
PubMed
Google Scholar
Mills JC, Shivdasani RA: Gastric epithelial stem cells. Gastroenterol. 2011, 140 (2): 412-424. 10.1053/j.gastro.2010.12.001.
Article
CAS
Google Scholar
Nozaki K, Ogawa M, Williams JA, Lafleur BJ, Ng V, Drapkin RI, Mills JC, Konieczny SF, Nomura S, Goldenring JR: A molecular signature of gastric metaplasia arising in response to acute parietal cell loss. Gastroenterol. 2008, 134 (2): 511-522. 10.1053/j.gastro.2007.11.058.
Article
CAS
Google Scholar
Goldenring JR, Nam KT, Wang TC, Mills JC, Wright NA: Spasmolytic polypeptide-expressing metaplasia and intestinal metaplasia: time for reevaluation of metaplasias and the origins of gastric cancer. Gastroenterol. 2010, 138 (7): 2207-2210. 10.1053/j.gastro.2010.04.023. 2210 e2201
Article
Google Scholar
Du P, Kibbe WA, Lin SM: Lumi: a pipeline for processing Illumina microarray. Bioinforma. 2008, 24 (13): 1547-1548. 10.1093/bioinformatics/btn224.
Article
CAS
Google Scholar
Smyth GK: Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol. 2004, 3 (1): 1544-6115.
Google Scholar
Patil KR, Nielsen J: Uncovering transcriptional regulation of metabolism by using metabolic network topology. Proc Natl Acad Sci USA. 2005, 102 (8): 2685-2689. 10.1073/pnas.0406811102.
Article
CAS
PubMed
PubMed Central
Google Scholar
Oliveira AP, Patil KR, Nielsen J: Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks. BMC Syst Biol. 2008, 2: 17-10.1186/1752-0509-2-17.
Article
PubMed
PubMed Central
Google Scholar
Grotkjaer T, Winther O, Regenberg B, Nielsen J, Hansen LK: Robust multi-scale clustering of large DNA microarray datasets with the consensus algorithm. Bioinform. 2006, 22 (1): 58-67. 10.1093/bioinformatics/bti746.
Article
CAS
Google Scholar
Bindea G, Mlecnik B, Hackl H, Charoentong P, Tosolini M, Kirilovsky A, Fridman WH, Pages F, Trajanoski Z, Galon J: ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks. Bioinform. 2009, 25 (8): 1091-1093. 10.1093/bioinformatics/btp101.
Article
CAS
Google Scholar
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T: Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 2003, 13 (11): 2498-2504. 10.1101/gr.1239303.
Article
CAS
PubMed
PubMed Central
Google Scholar
Workman C, Jensen LJ, Jarmer H, Berka R, Gautier L, Nielser HB, Saxild HH, Nielsen C, Brunak S, Knudsen S: A new non-linear normalization method for reducing variability in DNA microarray experiments. Genome Biol. 2002, 3 (9): research0048.1-0048.16.
Article
Google Scholar
Hubbel E: Plier White Paper. 2005, California: Santa Clala
Google Scholar
Lee HJ, Nam KT, Park HS, Kim MA, Lafleur BJ, Aburatani H, Yang HK, Kim WH, Goldenring JR: Gene expression profiling of metaplastic lineages identifies CDH17 as a prognostic marker in early stage gastric cancer. Gastroenterol. 2010, 139 (1): 213-225. 10.1053/j.gastro.2010.04.008. e213
Article
CAS
Google Scholar
Rubie C, Kempf K, Hans J, Su T, Tilton B, Georg T, Brittner B, Ludwig B, Schilling M: Housekeeping gene variability in normal and cancerous colorectal, pancreatic, esophageal, gastric and hepatic tissues. Mol Cell Probes. 2005, 19 (2): 101-109. 10.1016/j.mcp.2004.10.001.
Article
CAS
PubMed
Google Scholar
Kubista M, Andrade JM, Bengtsson M, Forootan A, Jonak J, Lind K, Sindelka R, Sjoback R, Sjogreen B, Strombom L, et al: The real-time polymerase chain reaction. Mol Aspects Med. 2006, 27 (2–3): 95-125.
Article
CAS
PubMed
Google Scholar
Ponten F, Gry M, Fagerberg L, Lundberg E, Asplund A, Berglund L, Oksvold P, Bjorling E, Hober S, Kampf C, et al: A global view of protein expression in human cells, tissues, and organs. Mol Syst Biol. 2009, 5: 337.
Article
PubMed
PubMed Central
Google Scholar
Wen S, Felley CP, Bouzourene H, Reimers M, Michetti P, Pan-Hammarstrom Q: Inflammatory gene profiles in gastric mucosa during Helicobacter pylori infection in humans. J Immunol. 2004, 172 (4): 2595-2606.
Article
CAS
PubMed
Google Scholar
Hofman VJ, Moreilhon C, Brest PD, Lassalle S, Le Brigand K, Sicard D, Raymond J, Lamarque D, Hebuterne XA, Mari B, et al: Gene expression profiling in human gastric mucosa infected with Helicobacter pylori. Mod Pathol. 2007, 20 (9): 974-989. 10.1038/modpathol.3800930.
Article
CAS
PubMed
Google Scholar
Galamb O, Gyorffy B, Sipos F, Dinya E, Krenacs T, Berczi L, Szoke D, Spisak S, Solymosi N, Nemeth AM, et al: Helicobacter pylori and antrum erosion-specific gene expression patterns: the discriminative role of CXCL13 and VCAM1 transcripts. Helicobacter. 2008, 13 (2): 112-126. 10.1111/j.1523-5378.2008.00584.x.
Article
CAS
PubMed
Google Scholar
Gruno M, Peet N, Seppet E, Kadaja L, Paju K, Eimre M, Orlova E, Peetsalu M, Tein A, Soplepmann J, et al: Oxidative phosphorylation and its coupling to mitochondrial creatine and adenylate kinases in human gastric mucosa. Am J Physiol Regul Integr Comp Physiol. 2006, 291 (4): R936-R946. 10.1152/ajpregu.00162.2006.
Article
CAS
PubMed
Google Scholar
Helander HF, Leth R, Olbe L: Stereological investigations on human gastric mucosa: I. Normal oxyntic mucosa. Anat Rec. 1986, 216 (3): 373-380. 10.1002/ar.1092160306.
Article
CAS
PubMed
Google Scholar
Duman JG, Pathak NJ, Ladinsky MS, McDonald KL, Forte JG: Three-dimensional reconstruction of cytoplasmic membrane networks in parietal cells. J Cell Sci. 2002, 115 (Pt 6): 1251-1258.
CAS
PubMed
Google Scholar
Mills JC, Andersson N, Stappenbeck TS, Chen CC, Gordon JI: Molecular characterization of mouse gastric zymogenic cells. J Biol Chem. 2003, 278 (46): 46138-46145. 10.1074/jbc.M308385200.
Article
CAS
PubMed
Google Scholar
Menguy R, Desbaillets L, Masters YF: Mechanism of stress ulcer: influence of hypovolemic shock on energy metabolism in the gastric mucosa. Gastroenterol. 1974, 66 (1): 46-55.
CAS
Google Scholar
Menguy R, Masters YF: Mechanism of stress ulcer. 3. Effects of hemorrhagic shock on energy metabolism in the mucosa of the antrum, corpus, and fundus of the rabbit stomach. Gastroenterol. 1974, 66 (6): 1168-1176.
CAS
Google Scholar
Allen A, Sellers LA, Bennett MK: The gastric mucosal epithelial barrier: role of mucus and fibrin. Scand J Gastroenterol Suppl. 1987, 128: 6-13.
Article
CAS
PubMed
Google Scholar
Sorbye H, Ovrebo K, Gislason H, Kvinnsland S, Svanes K: Blood flow and mucoid cap protect against penetration of carcinogens into superficially injured gastric mucosa of rats. Dig Dis Sci. 1995, 40 (8): 1720-1728. 10.1007/BF02212693.
Article
CAS
PubMed
Google Scholar
Xia HH, Kalantar JS, Talley NJ, Wyatt JM, Adams S, Chueng K, Mitchell HM: Antral-type mucosa in the gastric incisura, body, and fundus (antralization): a link between Helicobacter pylori infection and intestinal metaplasia?. Am J Gastroenterol. 2000, 95 (1): 114-121. 10.1111/j.1572-0241.2000.01609.x.
Article
CAS
PubMed
Google Scholar
Stemmermann GN: Intestinal metaplasia of the stomach. A status report. Cancer. 1994, 74 (2): 556-564. 10.1002/1097-0142(19940715)74:2<556::AID-CNCR2820740205>3.0.CO;2-J.
Article
CAS
PubMed
Google Scholar
Rubio CA, Jaramillo E, Suzuki G, Lagergren P, Nesi G: Antralization of the gastric mucosa of the incisura angularis and its gastrin expression. Int J Clin Exp Pathol. 2009, 2 (1): 65-70.
PubMed
Google Scholar
Schmidt PH, Lee JR, Joshi V, Playford RJ, Poulsom R, Wright NA, Goldenring JR: Identification of a metaplastic cell lineage associated with human gastric adenocarcinoma. Lab Invest. 1999, 79 (6): 639-646.
CAS
PubMed
Google Scholar
Jae Huh W, Mysorekar IU, Mills JC: Inducible activation of Cre recombinase in adult mice causes gastric epithelial atrophy, metaplasia, and regenerative changes in the absence of "floxed" alleles. Am J Physiol Gastrointest Liver Physiol. 2010, 299 (2): G368-G380. 10.1152/ajpgi.00021.2010.
Article
PubMed Central
Google Scholar
Reddi AH: Interplay between bone morphogenetic proteins and cognate binding proteins in bone and cartilage development: noggin, chordin and DAN. Arthritis Res. 2001, 3 (1): 1-5. 10.1186/ar133.
Article
CAS
PubMed
Google Scholar
Shinohara M, Mao M, Keeley TM, El-Zaatari M, Lee HJ, Eaton KA, Samuelson LC, Merchant JL, Goldenring JR, Todisco A: Bone morphogenetic protein signaling regulates gastric epithelial cell development and proliferation in mice. Gastroenterol. 2010, 139 (6): 2050-2060. 10.1053/j.gastro.2010.08.052. e2052
Article
CAS
Google Scholar
Bleuming SA, He XC, Kodach LL, Hardwick JC, Koopman FA, Ten Kate FJ, van Deventer SJ, Hommes DW, Peppelenbosch MP, Offerhaus GJ, et al: Bone morphogenetic protein signaling suppresses tumorigenesis at gastric epithelial transition zones in mice. Cancer Res. 2007, 67 (17): 8149-8155. 10.1158/0008-5472.CAN-06-4659.
Article
CAS
PubMed
Google Scholar
Suzuki M, Fujimoto W, Goto M, Morimatsu M, Syuto B, Iwanaga T: Cellular expression of gut chitinase mRNA in the gastrointestinal tract of mice and chickens. J Histochem Cytochem. 2002, 50 (8): 1081-1089. 10.1177/002215540205000810.
Article
CAS
PubMed
Google Scholar
Strobel S, Roswag A, Becker NI, Trenczek TE, Encarnacao JA: Insectivorous bats digest chitin in the stomach using acidic Mammalian chitinase. PLoS One. 2013, 8 (9): e72770-10.1371/journal.pone.0072770.
Article
CAS
PubMed
PubMed Central
Google Scholar
Ohno M, Togashi Y, Tsuda K, Okawa K, Kamaya M, Sakaguchi M, Sugahara Y, Oyama F: Quantification of Chitinase mRNA Levels in Human and Mouse Tissues by Real-Time PCR: Species-Specific Expression of Acidic Mammalian Chitinase in Stomach Tissues. PLoS One. 2013, 8 (6): e67399-10.1371/journal.pone.0067399.
Article
CAS
PubMed
PubMed Central
Google Scholar
Cozzarini E, Bellin M, Norberto L, Polese L, Musumeci S, Lanfranchi G, Paoletti MG: CHIT1 and AMCase expression in human gastric mucosa: correlation with inflammation and Helicobacter pylori infection. Eur J Gastroenterol Hepatol. 2009, 21 (10): 1119-1126. 10.1097/MEG.0b013e328329742a.
Article
CAS
PubMed
Google Scholar
Hartl D, He CH, Koller B, Da Silva CA, Kobayashi Y, Lee CG, Flavell RA, Elias JA: Acidic mammalian chitinase regulates epithelial cell apoptosis via a chitinolytic-independent mechanism. J Immunol. 2009, 182 (8): 5098-5106. 10.4049/jimmunol.0803446.
Article
CAS
PubMed
PubMed Central
Google Scholar
Lee CG, Da Silva CA, Dela Cruz CS, Ahangari F, Ma B, Kang MJ, He CH, Takyar S, Elias JA: Role of chitin and chitinase/chitinase-like proteins in inflammation, tissue remodeling, and injury. Annu Rev Physiol. 2011, 73: 479-501. 10.1146/annurev-physiol-012110-142250.
Article
CAS
PubMed
Google Scholar